In this post I'll simply be listing several tools to analyse (malicious) Android files.
All tools or scanners listed are free to use.
If you wish to analyze files from the Google Play store without actually installing/downloading them directly to your phone (or, for example, you don't use Android):
Online tools
AndroTotal
http://andrototal.org/
Anubis (currently discontinued)
http://anubis.iseclab.org/
Apk Analyzer
http://www.apk-analyzer.net/
Apk-deguard
http://apk-deguard.com/
ApkScan
http://apkscan.nviso.be/
Android APK Decompiler
http://www.decompileandroid.com/
AVC UnDroid
http://www.av-comparatives.org/avc-analyzer/
CopperDroid
http://copperdroid.isg.rhul.ac.uk/copperdroid/
Fallible
https://android.fallible.co/
Judge
http://judge.rednaga.io/
Koodous
https://koodous.com/
Reverse.it (Hybrid Analysis)
https://www.reverse.it/
SandDroid
http://sanddroid.xjtu.edu.cn/#
VirusTotal
https://www.virustotal.com/en/
Offline tools
AndroGuard
https://github.com/androguard/androguard/
Androl4b
https://github.com/sh4hin/Androl4b
Android-apktool (APKtool)
https://ibotpeaches.github.io/Apktool/
Android SDK
http://developer.android.com/sdk/index.html
Android Tamer
https://androidtamer.com/
APKiD
https://github.com/rednaga/APKiD
Apkinspector
https://github.com/honeynet/apkinspector/
CuckooDroid
https://github.com/idanr1986/cuckoo-droid
Dex2jar
http://code.google.com/p/dex2jar/ ( + JD-Gui)
Lobotomy
https://github.com/LifeForm-Labs/lobotomy
Mobile Security Framework (MobSF)
https://github.com/MobSF/Mobile-Security-Framework-MobSF
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